Sample Slurm Submit Scripts

#!/bin/bash

#SBATCH --job-name=mclz             # Job name

#SBATCH --partition=batch           # Partition (queue) name

#SBATCH --nodes=1                   # Number of nodes

#SBATCH --ntasks-per-node=1         # Number of tasks to call on each node

#SBATCH --mem-per-cpu=200mb         # Memory per processor

#SBATCH --time=24:00:00             # Time limit hrs:min:sec

#SBATCH --output=mclz.%j.out        # Standard output log

#SBATCH --error=mclz.%j.err         # Standard error log

JOBDIR=${SLURM_JOBID}

mkdir $JOBDIR

export PATH=./bin:$PATH

time srun ./bin/mclz.sh -n -I C -Z 6 -A He -L TA -N "TA"

cp c6+he* $JOBDIR

#!/bin/sh

#SBATCH --nodes=5                      # Number of nodes

#SBATCH --ntasks-per-node=6            # Number of tasks per node

#SBATCH --mem=20                       # Memory per CPU (MB)

#SBATCH -p batch                       # Partition to use

#SBATCH --output=example.%j.out        # Standard output log

#SBATCH --error=example.%j.err         # Standard error log

export PMIX_MCA_psec=native

export OMPI_MCA_btl="tcp,self"

srun centmpi

 

#!/bin/bash

#SBATCH --job-name=water0

#SBATCH --partition=batch             # Partition (queue) name

#SBATCH --nodes=1                     # Number of nodes

#SBATCH --ntasks=2                    # Number of MPI ranks

#SBATCH --ntasks-per-node=2           # Number of tasks to run on each node

#SBATCH --cpus-per-task=1             # Number of cores per MPI rank

#SBATCH --ntasks-per-core=1           # Number of tasks to call on each core

#SBATCH --output=water0-%j.out        # Standard output log

#SBATCH --error=water0-%j.err         # Standard error log

export PMIX_MCA_psec=native           # Required for munge to work

#export OMPI_MCA_btl="tcp,self"        # Required for OpenMPI

## If compiling before submitting, run these three commands before compiling.

## Otherwise, run these three commands before submitting your job, or remove the '###' to uncomment them

###module purge

###module load intel/2022.1.0

###module load impi/2021.6.0

unset I_MPI_PMI_LIBRARY               # When using impi and mpirun

mpirun -np 2 ./water0_MPI.exe

 

#!/bin/bash

#SBATCH --job-name=test1

#SBATCH --partition=batch             # Partition (queue) name

#SBATCH --nodes=1                     # Number of nodes

#SBATCH --ntasks=4                    # Number of MPI ranks

#SBATCH --ntasks-per-node=4           # Number of tasks to run on each node

#SBATCH --output=test1-%j.out        # Standard output log

#SBATCH --error=test1-%j.err         # Standard error log

# Since this code is compiled with intel mpi compilers, swap out gcc/OpenMPI

# You can also run these three module commands from the command line before submitting your job

# Comment them out here if you run these commands from the command line before job submission.

module purge

module load intel/2022.1.0

module load impi/2021.6.0